pappso::PeakIonMatch Class Reference

#include <peakionmatch.h>

Inheritance diagram for pappso::PeakIonMatch:

Public Member Functions
	PeakIonMatch (const DataPoint &peak, const PeptideFragmentIonSp &ion_sp, unsigned int charge)
	PeakIonMatch (const PeakIonMatch &other)
	PeakIonMatch (PeakIonMatch &&other)
virtual	~PeakIonMatch ()
PeakIonMatch &	operator= (const PeakIonMatch &other)
virtual const PeptideFragmentIonSp &	getPeptideFragmentIonSp () const
const DataPoint &	getPeak () const
unsigned int	getCharge () const
Enums::PeptideIon	getPeptideIonType () const
PeptideDirection	getPeptideIonDirection () const
virtual QString	toString () const

Private Attributes
DataPoint	_peak
PeptideFragmentIonSp	_ion_sp
unsigned int	_charge

Detailed Description

Definition at line 39 of file peakionmatch.h.

Constructor & Destructor Documentation

PeakIonMatch() [1/3]

pappso::PeakIonMatch::PeakIonMatch	(	const DataPoint &	peak,
		const PeptideFragmentIonSp &	ion_sp,
		unsigned int	charge )

Definition at line 35 of file peakionmatch.cpp.

  : _peak(peak), _ion_sp(ion_sp), _charge(charge)
{
}

References _charge, _ion_sp, and _peak.

Referenced by pappso::PeakIonIsotopeMatch::PeakIonIsotopeMatch(), pappso::PeakIonIsotopeMatch::PeakIonIsotopeMatch(), pappso::PeakIonIsotopeMatch::PeakIonIsotopeMatch(), PeakIonMatch(), PeakIonMatch(), and operator=().

PeakIonMatch() [2/3]

pappso::PeakIonMatch::PeakIonMatch

(

const PeakIonMatch &

other

)

Definition at line 42 of file peakionmatch.cpp.

  : _peak(other._peak), _ion_sp(other._ion_sp), _charge(other._charge)
{
}

References PeakIonMatch(), _charge, _ion_sp, and _peak.

PeakIonMatch() [3/3]

pappso::PeakIonMatch::PeakIonMatch

(

PeakIonMatch &&

other

)

Definition at line 47 of file peakionmatch.cpp.

  : _peak(std::move(other._peak)), _ion_sp(other._ion_sp), _charge(std::move(other._charge))
{
}

References PeakIonMatch(), _charge, _ion_sp, and _peak.

~PeakIonMatch()

pappso::PeakIonMatch::~PeakIonMatch ( )

virtual

Definition at line 52 of file peakionmatch.cpp.

{
}

Member Function Documentation

getCharge()

unsigned int pappso::PeakIonMatch::getCharge

(

)

const

Definition at line 80 of file peakionmatch.cpp.

{
  return _charge;
}

References _charge.

Referenced by pappso::PeakIonIsotopeMatch::PeakIonIsotopeMatch(), pappso::PeptideSpectrumMatch::contains(), pappso::findComplementIonType(), and toString().

getPeak()

const DataPoint & pappso::PeakIonMatch::getPeak

(

)

const

Definition at line 74 of file peakionmatch.cpp.

{
  return _peak;
}

References _peak.

Referenced by pappso::QCPSpectrum::addMassDelta(), pappso::QCPSpectrum::addPeakIonIsotopeMatch(), and pappso::PeakIonIsotopeMatch::toString().

getPeptideFragmentIonSp()

const PeptideFragmentIonSp & pappso::PeakIonMatch::getPeptideFragmentIonSp ( ) const

virtual

Definition at line 68 of file peakionmatch.cpp.

{
  return _ion_sp;
}

References _ion_sp.

Referenced by pappso::PeptideSpectrumMatch::contains(), and pappso::findComplementIonType().

getPeptideIonDirection()

PeptideDirection pappso::PeakIonMatch::getPeptideIonDirection

(

)

const

Definition at line 92 of file peakionmatch.cpp.

{
  return _ion_sp.get()->getPeptideFragmentSp().get()->getPeptideIonDirection();
}

References _ion_sp.

getPeptideIonType()

Enums::PeptideIon pappso::PeakIonMatch::getPeptideIonType

(

)

const

Definition at line 86 of file peakionmatch.cpp.

{
  return _ion_sp.get()->getPeptideIonType();
}

References _ion_sp.

Referenced by pappso::QCPSpectrum::addPeakIonIsotopeMatch(), and pappso::findComplementIonType().

operator=()

PeakIonMatch & pappso::PeakIonMatch::operator=

(

const PeakIonMatch &

other

)

Definition at line 58 of file peakionmatch.cpp.

{
  _peak   = other._peak;
  _ion_sp = other._ion_sp;
  _charge = other._charge;
 
  return *this;
}

References PeakIonMatch(), _charge, _ion_sp, and _peak.

Referenced by pappso::PeakIonIsotopeMatch::operator=().

toString()

QString pappso::PeakIonMatch::toString ( ) const

virtual

Reimplemented in pappso::PeakIonIsotopeMatch.

Definition at line 98 of file peakionmatch.cpp.

{
  return QString("%1").arg(_ion_sp.get()->getCompletePeptideIonName(getCharge()));
}

References _ion_sp, and getCharge().

Referenced by pappso::PeakIonIsotopeMatch::toString().

Member Data Documentation

_charge

unsigned int pappso::PeakIonMatch::_charge

private

Definition at line 66 of file peakionmatch.h.

Referenced by PeakIonMatch(), PeakIonMatch(), PeakIonMatch(), getCharge(), and operator=().

_ion_sp

PeptideFragmentIonSp pappso::PeakIonMatch::_ion_sp

private

Definition at line 65 of file peakionmatch.h.

Referenced by PeakIonMatch(), PeakIonMatch(), PeakIonMatch(), getPeptideFragmentIonSp(), getPeptideIonDirection(), getPeptideIonType(), operator=(), and toString().

_peak

DataPoint pappso::PeakIonMatch::_peak

private

Definition at line 64 of file peakionmatch.h.

Referenced by PeakIonMatch(), PeakIonMatch(), PeakIonMatch(), getPeak(), and operator=().

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The documentation for this class was generated from the following files:

• pappsomspp/core/psm/peakionmatch.h
• pappsomspp/core/psm/peakionmatch.cpp