libpappsomspp
Library for mass spectrometry
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pappso::MzcborMsRunReader Member List

This is the complete list of members for pappso::MzcborMsRunReader, including all inherited members.

accept(const QString &file_name) const overridepappso::MzcborMsRunReaderprotectedvirtual
acquireDevice() overridepappso::MzcborMsRunReadervirtual
fillMzcborSpectrum(std::size_t spectrum_index, pappso::cbor::mzcbor::Spectrum &spectrum, bool want_binary_data) constpappso::MzcborMsRunReaderprotectedvirtual
getMsRunId() constpappso::MsRunReader
getMzcborSpectrumSp(std::size_t spectrum_index, bool want_binary_data) constpappso::MzcborMsRunReader
getOboPsiModTermInstrumentModelName() const overridepappso::MzcborMsRunReadervirtual
getRetentionTimeLine() overridepappso::MzcborMsRunReadervirtual
getSpectrumIndexPositionInFile() constpappso::MzcborMsRunReader
getTicChromatogram() overridepappso::MzcborMsRunReadervirtual
hasScanNumbers() const overridepappso::MzcborMsRunReadervirtual
initialize() overridepappso::MzcborMsRunReaderprotectedvirtual
isMonoThread() constpappso::MsRunReader
m_cborFileInfopappso::MzcborMsRunReaderprotected
m_isMonoThreadpappso::MsRunReaderprivate
m_nativeId2SpectrumIndexMappappso::MzcborMsRunReaderprotected
m_scan2SpectrumIndexMappappso::MzcborMsRunReaderprotected
m_spectrumIndexPositionInFilepappso::MzcborMsRunReaderprotected
m_spectrumMsLevelListpappso::MzcborMsRunReaderprotected
m_spectrumRtListpappso::MzcborMsRunReaderprotected
m_spectrumTotalIonCountListpappso::MzcborMsRunReaderprotected
massSpectrumCstSPtr(std::size_t spectrum_index) overridepappso::MzcborMsRunReadervirtual
massSpectrumSPtr(std::size_t spectrum_index) overridepappso::MzcborMsRunReadervirtual
mcsp_msRunIdpappso::MsRunReaderprotected
mpa_multiMapScanNumberpappso::MsRunReaderprotected
mpa_mzcborFileDevicepappso::MzcborMsRunReaderprotected
MsRunReader(const MsRunIdCstSPtr &ms_run_id)pappso::MsRunReader
MsRunReader(const MsRunReader &other)pappso::MsRunReader
MzcborMsRunReader(MsRunIdCstSPtr &msrun_id_csp)pappso::MzcborMsRunReader
newXicCoordSPtrFromQualifiedMassSpectrum(const pappso::QualifiedMassSpectrum &mass_spectrum, pappso::PrecisionPtr precision) const overridepappso::MzcborMsRunReadervirtual
newXicCoordSPtrFromSpectrumIndex(std::size_t spectrum_index, pappso::PrecisionPtr precision) const overridepappso::MzcborMsRunReadervirtual
qualifiedMassSpectrum(std::size_t spectrum_index, bool want_binary_data=true) const overridepappso::MzcborMsRunReadervirtual
readSpectrumCollection(SpectrumCollectionHandlerInterface &handler) overridepappso::MzcborMsRunReadervirtual
readSpectrumCollection2(const MsRunReadConfig &config, SpectrumCollectionHandlerInterface &handler) overridepappso::MzcborMsRunReadervirtual
readSpectrumCollectionByMsLevel(SpectrumCollectionHandlerInterface &handler, unsigned int ms_level) overridepappso::MzcborMsRunReadervirtual
readSpectrumCollectionWithMsrunReadConfig(const MsRunReadConfig &config, SpectrumCollectionHandlerInterface &handler)pappso::MzcborMsRunReaderprivate
releaseDevice() overridepappso::MzcborMsRunReadervirtual
scanNumber2SpectrumIndex(std::size_t scan_number) overridepappso::MzcborMsRunReadervirtual
setMonoThread(bool is_mono_thread)pappso::MsRunReader
spectrumListSize() const overridepappso::MzcborMsRunReadervirtual
spectrumStringIdentifier2SpectrumIndex(const QString &spectrum_identifier) overridepappso::MzcborMsRunReadervirtual
~MsRunReader()pappso::MsRunReadervirtual
~MzcborMsRunReader()pappso::MzcborMsRunReadervirtual