java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - javax.swing.JComponent
    - - javax.swing.JPanel
      - org.openscience.jmol.app.jmolpanel.JmolPanel
        
        org.openscience.jmol.app.janocchio.NMR_JmolPanel

All Implemented Interfaces:

java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, javax.accessibility.Accessible, JsonNioClient, SplashInterface
```
public class NMR_JmolPanel
extends JmolPanel
```
See Also:

Serialized Form

Nested Class Summary

Nested Classes
Modifier and Type	Class	Description
`(package private) class`	`NMR_JmolPanel.AtomSetChooserAction`
`class`	`NMR_JmolPanel.DetachAppletAction`
`class`	`NMR_JmolPanel.JumpBestFrameAction`
`class`	`NMR_JmolPanel.LabelNmrAction`
`private class`	`NMR_JmolPanel.MoleculeDependentAction`
`(package private) class`	`NMR_JmolPanel.MyStatusListener`
`class`	`NMR_JmolPanel.ReadNamfisAction`
`class`	`NMR_JmolPanel.ReadNmrAction`
`class`	`NMR_JmolPanel.ReattachAppletAction`
`(package private) class`	`NMR_JmolPanel.SaveNmrAction`
`class`	`NMR_JmolPanel.ViewCoupleTableAction`
`class`	`NMR_JmolPanel.ViewNoeTableAction`
`class`	`NMR_JmolPanel.WriteNamfisAction`

Nested classes/interfaces inherited from class org.openscience.jmol.app.jmolpanel.JmolPanel
JmolPanel.AboutAction, JmolPanel.ActionChangedListener, JmolPanel.AnimButton, JmolPanel.AppCloser, JmolPanel.CloseAction, JmolPanel.ConsoleAction, JmolPanel.CopyImageAction, JmolPanel.CopyScriptAction, JmolPanel.CreditsAction, JmolPanel.ExecuteScriptAction, JmolPanel.ExitAction, JmolPanel.ExportAction, JmolPanel.GaussianAction, JmolPanel.NewAction, JmolPanel.NewwinAction, JmolPanel.OpenAction, JmolPanel.OpenMolAction, JmolPanel.OpenPdbAction, JmolPanel.OpenUrlAction, JmolPanel.PasteClipboardAction, JmolPanel.PovrayAction, JmolPanel.PrintAction, JmolPanel.RecentFilesAction, JmolPanel.ResizeAction, JmolPanel.ScriptEditorAction, JmolPanel.ScriptWindowAction, JmolPanel.SurfaceToolAction, JmolPanel.ToWebAction, JmolPanel.UguideAction, JmolPanel.ViewMeasurementTableAction, JmolPanel.WhatsNewAction, JmolPanel.WriteAction

Nested classes/interfaces inherited from class javax.swing.JPanel
javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent
javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container
java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component
java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Nested classes/interfaces inherited from interface org.openscience.jmol.app.jsonkiosk.JsonNioClient
JsonNioClient.TouchHandler

Field Summary

Fields
Modifier and Type	Field	Description
`(package private) static java.awt.Point`	`border`
`static java.lang.String`	`chemFileProperty`
`CoupleTable`	`coupleTable`
`protected static java.io.File`	`currentDir`
`private static java.lang.String`	`detachAppletAction`
`(package private) javax.swing.JFileChooser`	`exportChooser`
`FrameCounter`	`frameCounter`
`FrameDeltaDisplay`	`frameDeltaDisplay`
`(package private) static java.lang.Boolean`	`haveBorder`
`(package private) static java.util.Set<java.lang.String>`	`htGuiChanges`
`protected java.util.Map<java.lang.String,java.lang.Thread>`	`htMessageCallbacks`
`(package private) boolean`	`isApplet`
`private static java.lang.String`	`jumpBestFrameAction`
`private static java.lang.String`	`labelNmrAction`
`LabelSetter`	`labelSetter`
`javax.swing.JSplitPane`	`mainSplitPane`
`(package private) static int`	`MIN_SIZE`
`(package private) NmrApplet`	`nmrApplet`
`private NMR_DisplayPanel`	`nmrDisplay`
`private NmrGuiMap`	`nmrguimap`
`NoeTable`	`noeTable`
`(package private) FileChooser`	`openChooser`
`PopulationDisplay`	`populationDisplay`
`private static java.lang.String`	`readNamfisAction`
`(package private) javax.swing.JFileChooser`	`readNamfisChooser`
`private static java.lang.String`	`readNmrAction`
`(package private) javax.swing.JFileChooser`	`readNmrChooser`
`private static java.lang.String`	`reattachAppletAction`
`(package private) javax.swing.JFileChooser`	`saveNamfisChooser`
`private static java.lang.String`	`saveNmrAction`
`(package private) javax.swing.JFileChooser`	`saveNmrChooser`
`private static java.lang.String`	`writeNamfisAction`

Fields inherited from class org.openscience.jmol.app.jmolpanel.JmolPanel
aboutAction, allowJavaConsole, appletContext, atomSetChooser, atomsetchooserAction, bannerFrame, clientService, closeAction, commands, consoleAction, consoleframe, copyImageAction, copyImageActionProperty, copyScriptAction, copyScriptActionProperty, creditsAction, display, EDITOR_WINDOW_NAME, editorAction, executeScriptAction, exitAction, exportAction, exportActionProperty, FILE_OPEN_WINDOW_NAME, frame, gaussianAction, gaussianDialog, guimap, historyFile, imageType, isPlugin, jmolApp, kioskFrame, measurementTable, menuItems, modelAdapter, myStatusListener, newAction, newwinAction, numWindows, openAction, openmolAction, openpdbAction, openurlAction, OUTSOCKET, pasteClipboardAction, pasteClipboardActionProperty, pcs, pluginFile, povrayAction, povrayActionProperty, preferencesDialog, printAction, printActionProperty, qualityJPG, qualityPNG, recentFiles, recentFilesAction, resizeAction, screenSize, SCRIPT_WINDOW_NAME, splash, startupHeight, startupWidth, status, surfaceTool, SURFACETOOL_WINDOW_NAME, surfaceToolAction, surfaceToolActionProperty, toolbar, toWebAction, toWebActionProperty, uguideAction, viewMeasurementTableAction, vwr, vwrOptions, WEB_MAKER_WINDOW_NAME, whatsnewAction, windowName, writeAction, writeActionProperty

Fields inherited from class javax.swing.JComponent
listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component
accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors
Constructor	Description
`NMR_JmolPanel(JmolApp jmolApp, Splash splash, javax.swing.JFrame frame, Jmol parent, int startupWidth, int startupHeight, java.util.Map<java.lang.String,java.lang.Object> vwrOptions, java.awt.Point loc)`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`private void`	`checkLoadAndRun(java.lang.String structureFile, java.lang.Object fileData, java.lang.String fileType)`
`(package private) void`	`clearViewerSelection()`
`protected void`	`createDisplayAndAddStatusListener()`
`protected GuiMap`	`createGuiMap()`
`protected StatusBar`	`createStatusBar()`
`protected javax.swing.JToolBar`	`createToolBar()`	Create the toolbar.
`protected boolean`	`doClose(boolean saveSize)`
`protected static void`	`dumpContainer(java.awt.Container c, java.lang.String s)`
`private static java.lang.String`	`firstLineOf(java.lang.String s)`
`(package private) javajs.util.BS[]`	`getAllMolecules()`
`java.lang.String`	`getCurrentStructureFile()`
`protected void`	`getDialogs()`
`(package private) NmrMolecule`	`getDistanceJMolecule(javajs.util.BS mol, java.lang.String[] labelArray, boolean forNOE)`
`protected java.util.List<javax.swing.Action>`	`getFrameActions()`
`int`	`getFrameAtomCount()`
`protected javax.swing.ImageIcon`	`getIconX(java.lang.String img)`
`void`	`getJavaConsole()`
`protected void`	`getMeasurementTable()`
`javax.swing.JMenuItem`	`getMenuItem(java.lang.String name)`	Fetch the menu item that was created for the given command.
`int`	`getMinindex()`
`protected java.lang.String`	`getStringX(java.lang.String cmd)`
`static java.io.File`	`getUserDirectory()`	Returns a new File referenced by the property 'user.dir', or null if the property is not defined.
`(package private) Atom[]`	`getViewerMeasurement(int vRow, int type)`
`(package private) int`	`getViewerRow(int row, int type)`
`protected java.lang.String`	`getWindowName()`
`protected void`	`launchMainFrame()`
`(package private) void`	`notifyScriptCallback(java.lang.String script)`
`void`	`readNmrData(java.io.File file)`
`void`	`readNmrDataJSON(java.io.File file)`
`(package private) void`	`runScriptWithCallback(java.lang.Thread t, java.lang.String command)`
`protected void`	`saveWindowSizes()`
`protected void`	`setAtomChooser()`
`(package private) void`	`setCurrentDirectoryAll(java.io.File cDir)`
`protected void`	`setFrameLocation(java.awt.Point loc, JmolPanel parent)`
`protected void`	`setIntoFrame()`
`protected java.lang.String`	`setMenuKeys(java.lang.String key, java.lang.String tokens)`	opportunity to adjust menus for a custom application
`protected void`	`setupConsole()`
`protected void`	`setupDisplay()`
`protected void`	`setupDnD()`
`protected void`	`setupModelAdapterAndViewer()`
`protected static java.lang.String[]`	`tokenize(java.lang.String input)`	Take the given string and chop it up into a series of strings on whitespace boundries.
`void`	`writeNmrData(java.io.File file)`

Methods inherited from class org.openscience.jmol.app.jmolpanel.JmolPanel
addHelpMenuBar, addJmolProperties, addJmolProperty, addJmolWindowInfo, addJmolWindowInnerInfo, addMacrosMenu, addNormalMenuBar, addPluginMenu, createMenu, createMenubar, createMenuItem, createToolbarButton, getAction, getAndRegisterPlugin, getInstanceWithParams, getJavaConsole, getJmolProperty, getJsonNioServer, getPluginOption, getPreference, isServer, newToolbar, nioClosed, nioSync, print, processNioMessage, report, say, serverCycle, setCommandHooks, setMenuState, setPluginOption, setStatus, showStatus, syncScript, updateConsoleFont

Methods inherited from class javax.swing.JPanel
getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent
addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

MIN_SIZE
```
static final int MIN_SIZE
```
See Also:

Constant Field Values

nmrDisplay
```
private NMR_DisplayPanel nmrDisplay
```

mainSplitPane

public javax.swing.JSplitPane mainSplitPane

noeTable
```
public NoeTable noeTable
```

coupleTable
```
public CoupleTable coupleTable
```

frameCounter
```
public FrameCounter frameCounter
```

labelSetter
```
public LabelSetter labelSetter
```

populationDisplay

public PopulationDisplay populationDisplay

frameDeltaDisplay

public FrameDeltaDisplay frameDeltaDisplay

currentDir

protected static java.io.File currentDir

openChooser
```
FileChooser openChooser
```

exportChooser
```
javax.swing.JFileChooser exportChooser
```

saveNmrChooser
```
javax.swing.JFileChooser saveNmrChooser
```

readNmrChooser
```
javax.swing.JFileChooser readNmrChooser
```

saveNamfisChooser

javax.swing.JFileChooser saveNamfisChooser

readNamfisChooser

javax.swing.JFileChooser readNamfisChooser

nmrApplet
```
NmrApplet nmrApplet
```

isApplet
```
boolean isApplet
```

nmrguimap
```
private NmrGuiMap nmrguimap
```

border
```
static java.awt.Point border
```

haveBorder
```
static java.lang.Boolean haveBorder
```

htGuiChanges

static java.util.Set<java.lang.String> htGuiChanges

saveNmrAction

private static final java.lang.String saveNmrAction

See Also:: Constant Field Values

readNmrAction

private static final java.lang.String readNmrAction

See Also:: Constant Field Values

detachAppletAction

private static final java.lang.String detachAppletAction

See Also:: Constant Field Values

reattachAppletAction

private static final java.lang.String reattachAppletAction

See Also:: Constant Field Values

writeNamfisAction

private static final java.lang.String writeNamfisAction

See Also:: Constant Field Values

readNamfisAction

private static final java.lang.String readNamfisAction

See Also:: Constant Field Values

jumpBestFrameAction

private static final java.lang.String jumpBestFrameAction

See Also:: Constant Field Values

labelNmrAction

private static final java.lang.String labelNmrAction

See Also:: Constant Field Values

chemFileProperty

public static final java.lang.String chemFileProperty

See Also:: Constant Field Values

htMessageCallbacks

protected java.util.Map<java.lang.String,java.lang.Thread> htMessageCallbacks

Constructor Detail

NMR_JmolPanel

public NMR_JmolPanel(JmolApp jmolApp,
                     Splash splash,
                     javax.swing.JFrame frame,
                     Jmol parent,
                     int startupWidth,
                     int startupHeight,
                     java.util.Map<java.lang.String,java.lang.Object> vwrOptions,
                     java.awt.Point loc)

Method Detail

getMenuItem
```
public javax.swing.JMenuItem getMenuItem(java.lang.String name)
```
Description copied from class: JmolPanel

Fetch the menu item that was created for the given command.

Overrides:

getMenuItem in class JmolPanel

Parameters:

name - Name of the action.

Returns:

item created for the given command or null if one wasn't created.

getDistanceJMolecule

NmrMolecule getDistanceJMolecule(javajs.util.BS mol,
                                 java.lang.String[] labelArray,
                                 boolean forNOE)

getAllMolecules
```
javajs.util.BS[] getAllMolecules()
```

getWindowName
```
protected java.lang.String getWindowName()
```
Overrides:

getWindowName in class JmolPanel

getFrameActions
```
protected java.util.List<javax.swing.Action> getFrameActions()
```
Overrides:

getFrameActions in class JmolPanel

Returns:

A list of Actions that is understood by the upper level application

getStringX

protected java.lang.String getStringX(java.lang.String cmd)

Overrides:: getStringX in class JmolPanel

getIconX

protected javax.swing.ImageIcon getIconX(java.lang.String img)

Overrides:: getIconX in class JmolPanel

createGuiMap
```
protected GuiMap createGuiMap()
```
Overrides:

createGuiMap in class JmolPanel

createStatusBar
```
protected StatusBar createStatusBar()
```
Overrides:

createStatusBar in class JmolPanel

createToolBar
```
protected javax.swing.JToolBar createToolBar()
```
Description copied from class: JmolPanel

Create the toolbar. By default this reads the resource file for the definition of the toolbars.

Overrides:

createToolBar in class JmolPanel

Returns:

The toolbar

createDisplayAndAddStatusListener
```
protected void createDisplayAndAddStatusListener()
```
Overrides:

createDisplayAndAddStatusListener in class JmolPanel

setupModelAdapterAndViewer
```
protected void setupModelAdapterAndViewer()
```
Overrides:

setupModelAdapterAndViewer in class JmolPanel

getDialogs
```
protected void getDialogs()
```
Overrides:

getDialogs in class JmolPanel

getMeasurementTable
```
protected void getMeasurementTable()
```
Overrides:

getMeasurementTable in class JmolPanel

setupDisplay
```
protected void setupDisplay()
```
Overrides:

setupDisplay in class JmolPanel

setFrameLocation

protected void setFrameLocation(java.awt.Point loc,
                                JmolPanel parent)

Overrides:: setFrameLocation in class JmolPanel

setIntoFrame
```
protected void setIntoFrame()
```
Overrides:

setIntoFrame in class JmolPanel

setupConsole
```
protected void setupConsole()
```
Overrides:

setupConsole in class JmolPanel

setupDnD
```
protected void setupDnD()
```
Overrides:

setupDnD in class JmolPanel

setAtomChooser
```
protected void setAtomChooser()
```
Overrides:

setAtomChooser in class JmolPanel

launchMainFrame
```
protected void launchMainFrame()
```
Overrides:

launchMainFrame in class JmolPanel

saveWindowSizes
```
protected void saveWindowSizes()
```
Overrides:

saveWindowSizes in class JmolPanel

getJavaConsole
```
public void getJavaConsole()
```
Overrides:

getJavaConsole in class JmolPanel

setMenuKeys
```
protected java.lang.String setMenuKeys(java.lang.String key,
                                       java.lang.String tokens)
```
Description copied from class: JmolPanel

opportunity to adjust menus for a custom application

Overrides:

setMenuKeys in class JmolPanel

Returns:

possibly changed token string

doClose

protected boolean doClose(boolean saveSize)

Overrides:: doClose in class JmolPanel

setCurrentDirectoryAll

void setCurrentDirectoryAll(java.io.File cDir)

getMinindex
```
public int getMinindex()
```

getCurrentStructureFile

public java.lang.String getCurrentStructureFile()

getUserDirectory
```
public static java.io.File getUserDirectory()
```
Returns a new File referenced by the property 'user.dir', or null if the property is not defined.

Returns:

a File to the user directory

dumpContainer

protected static void dumpContainer(java.awt.Container c,
                                    java.lang.String s)

tokenize
```
protected static java.lang.String[] tokenize(java.lang.String input)
```
Take the given string and chop it up into a series of strings on whitespace boundries. This is useful for trying to get an array of strings out of the resource file.

Parameters:

input - String to chop

Returns:

Strings chopped on whitespace boundries

writeNmrData

public void writeNmrData(java.io.File file)
                  throws java.io.IOException

Throws:: java.io.IOException

readNmrData

public void readNmrData(java.io.File file)
                 throws java.lang.Exception

Throws:: java.lang.Exception

readNmrDataJSON

public void readNmrDataJSON(java.io.File file)
                     throws java.lang.Exception

Throws:: java.lang.Exception

checkLoadAndRun

private void checkLoadAndRun(java.lang.String structureFile,
                             java.lang.Object fileData,
                             java.lang.String fileType)

firstLineOf

private static java.lang.String firstLineOf(java.lang.String s)

runScriptWithCallback

void runScriptWithCallback(java.lang.Thread t,
                           java.lang.String command)

notifyScriptCallback

void notifyScriptCallback(java.lang.String script)

getFrameAtomCount
```
public int getFrameAtomCount()
```

getViewerMeasurement

Atom[] getViewerMeasurement(int vRow,
                            int type)

getViewerRow

int getViewerRow(int row,
                 int type)

clearViewerSelection
```
void clearViewerSelection()
```

Class NMR_JmolPanel

Nested Class Summary

Nested classes/interfaces inherited from class org.openscience.jmol.app.jmolpanel.JmolPanel

Nested classes/interfaces inherited from class javax.swing.JPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Nested classes/interfaces inherited from interface org.openscience.jmol.app.jsonkiosk.JsonNioClient

Field Summary

Fields inherited from class org.openscience.jmol.app.jmolpanel.JmolPanel

Fields inherited from class javax.swing.JComponent

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Constructor Summary

Method Summary

Methods inherited from class org.openscience.jmol.app.jmolpanel.JmolPanel

Methods inherited from class javax.swing.JPanel

Methods inherited from class javax.swing.JComponent

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Field Detail

MIN_SIZE

nmrDisplay

mainSplitPane

noeTable

coupleTable

frameCounter

labelSetter

populationDisplay

frameDeltaDisplay

currentDir

openChooser

exportChooser

saveNmrChooser

readNmrChooser

saveNamfisChooser

readNamfisChooser

nmrApplet

isApplet

nmrguimap

border

haveBorder

htGuiChanges

saveNmrAction

readNmrAction

detachAppletAction

reattachAppletAction

writeNamfisAction

readNamfisAction

jumpBestFrameAction

labelNmrAction

chemFileProperty

htMessageCallbacks

Constructor Detail

NMR_JmolPanel

Method Detail

getMenuItem

getDistanceJMolecule

getAllMolecules

getWindowName

getFrameActions

getStringX

getIconX

createGuiMap

createStatusBar

createToolBar

createDisplayAndAddStatusListener

setupModelAdapterAndViewer

getDialogs

getMeasurementTable

setupDisplay

setFrameLocation

setIntoFrame

setupConsole

setupDnD

setAtomChooser

launchMainFrame

saveWindowSizes

getJavaConsole