IsoIntersectGridReader

java.lang.Object
- org.jmol.jvxl.readers.SurfaceReader
- - org.jmol.jvxl.readers.SurfaceFileReader
  - - org.jmol.jvxl.readers.VolumeFileReader
    - - org.jmol.jvxl.readers.IsoIntersectGridReader

All Implemented Interfaces:

VertexDataServer
```
class IsoIntersectGridReader
extends VolumeFileReader
```
A class to read a linear combination of cube file data. readerData is Object[] { VolumeFileReader[], float[] }

Field Summary

Fields
Modifier and Type Field Description

private float[] factors

private VolumeFileReader[] readers
- Fields inherited from class org.jmol.jvxl.readers.VolumeFileReader
  ac, boundingBox, canDownsample, downsampleFactor, downsampleRemainders, endOfData, isAngstroms, nData, negativeAtomCount, nSkipX, nSkipY, nSkipZ, nSurfaces, readerClosed
- Fields inherited from class org.jmol.jvxl.readers.SurfaceFileReader
  binarydoc, br, line, next, out
- Fields inherited from class org.jmol.jvxl.readers.SurfaceReader
  allowSigma, ANGSTROMS_PER_BOHR, anisotropy, center, cJvxlEdgeNaN, colorFractionBase, colorFractionRange, contourVertexCount, dataMax, dataMean, dataMin, defaultCutoff, defaultMappedDataMax, defaultMappedDataMin, eccentricityMatrix, eccentricityMatrixInverse, eccentricityRatio, eccentricityScale, edgeFractionBase, edgeFractionRange, fractionData, hasColorData, haveSurfaceAtoms, isAnisotropic, isEccentric, isJvxl, isPeriodic, isProgressive, isQuiet, isXLowToHigh, jvxlColorDataRead, jvxlCutoff, jvxlData, jvxlDataIs2dContour, jvxlDataIsColorDensity, jvxlDataIsColorMapped, jvxlDataIsPrecisionColor, jvxlEdgeDataRead, jvxlFileHeaderBuffer, jvxlNSurfaceInts, jvxlVoxelBitSet, marchingCubes, marchingSquares, meshData, meshDataServer, minMax, nBytes, nDataPoints, nPointsX, nPointsY, nPointsZ, params, ptTemp, qpc, sg, vertexDataOnly, volumeData, volumetricOrigin, volumetricVectors, voxelCounts, voxelData, xyzMax, xyzMin, yzCount, yzPlanes

Constructor Summary

Constructors
Constructor Description

IsoIntersectGridReader()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected void`	`closeReader()`
`protected float`	`getNextVoxelValue()`
`protected void`	`init(SurfaceGenerator sg)`	implemented in SurfaceFileReader and
`protected void`	`readParameters()`
`protected boolean`	`readVolumeParameters(boolean isMapData)`

Methods inherited from class org.jmol.jvxl.readers.VolumeFileReader
checkAtomLine, getPlane, getPlaneNCI, getSPFv, getSurfacePointAndFraction, getValue, getVoxelBitSet, gotoData, init2, init2VFR, initializeSurfaceData, nextVoxel, readSurfaceData, readSurfaceDataVFR, readVolumeData, readVolumeDataVFR, readVoxelVector, recordData, skipComments, skipData, skipDataVFR, swapXZ

Methods inherited from class org.jmol.jvxl.readers.SurfaceFileReader
closeReaderSFR, discardTempData, getQuotedStringNext, getTokens, init2SFR, newBinaryDocument, parseFloat, parseFloatArray, parseFloatArrayStr, parseFloatRange, parseFloatStr, parseInt, parseIntNext, parseIntStr, rd, setOutputChannel, setStream, skipTo

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - readers
```
private VolumeFileReader[] readers
```
  - factors
```
private float[] factors
```
- Constructor Detail
  - IsoIntersectGridReader
```
public IsoIntersectGridReader()
```
- Method Detail
  - init
```
protected void init(SurfaceGenerator sg)
```
    Description copied from class: SurfaceReader
    
    implemented in SurfaceFileReader and
    
    Overrides:
    
    init in class SurfaceFileReader
  - readVolumeParameters
```
protected boolean readVolumeParameters(boolean isMapData)
```
    Overrides:
    
    readVolumeParameters in class VolumeFileReader
  - getNextVoxelValue
```
protected float getNextVoxelValue()
                           throws java.lang.Exception
```
    Overrides:
    
    getNextVoxelValue in class VolumeFileReader
    
    Throws:
    
    java.lang.Exception
  - closeReader
```
protected void closeReader()
```
    Overrides:
    
    closeReader in class VolumeFileReader
  - readParameters
```
protected void readParameters()
                       throws java.lang.Exception
```
    Specified by:
    
    readParameters in class VolumeFileReader
    
    Throws:
    
    java.lang.Exception