org.jmol.shapespecial

Class Dots

java.lang.Object

org.jmol.shape.Shape

org.jmol.shape.AtomShape

org.jmol.shapespecial.Dots

Direct Known Subclasses:

GeoSurface

public class Dots
extends AtomShape

Field Summary

Fields

Modifier and Type	Field and Description
private java.util.BitSet	bsIgnore
(package private) java.util.BitSet	bsOn
private java.util.BitSet	bsSelected
EnvelopeCalculation	ec
boolean	isSurface
(package private) static int	MAX_LEVEL
(package private) RadiusData	rdLast
(package private) static float	SURFACE_DISTANCE_FOR_CALCULATION
(package private) int	thisArgb
(package private) int	thisAtom
(package private) float	thisRadius

Fields inherited from class org.jmol.shape.AtomShape

atomCount, atoms, bsColixSet, bsSizeSet, colixes, isActive, mads, paletteIDs

Fields inherited from class org.jmol.shape.Shape

g3d, isBioShape, modelSet, myVisibilityFlag, RADIUS_MAX, shapeID, translucentAllowed, translucentLevel, viewer, xmlProperties

Constructor Summary

Constructors

Constructor and Description
Dots()

Method Summary

Methods

Modifier and Type	Method and Description
java.lang.String	getShapeState()
int	getSize(int atomIndex)
(package private) void	initialize()
void	initShape()
void	setModelClickability()
void	setProperty(java.lang.String propertyName, java.lang.Object value, java.util.BitSet bs) may come from any source -- executed AFTER a shape's own setProperty method
protected void	setSize(RadiusData rd, java.util.BitSet bsSelected)

Methods inherited from class org.jmol.shape.AtomShape

initModelSet, setColixAndPalette, setSize

Methods inherited from class org.jmol.shape.Shape

appendCmd, checkBoundsMinMax, checkObjectClicked, checkObjectDragged, checkObjectHovered, coordinateInRange, encodeColor, findNearestAtomIndex, getColix, getColorCommand, getColorCommand, getFontCommand, getIndexFromName, getProperty, getProperty, getShapeCommands, getShapeCommands, getShapeDetail, getSize, getTranslucentLabel, getViewer, initializeShape, merge, setColix, setColix, setColix, setModelSet, setShapeProperty, setShapeSize, setStateInfo, setStateInfo, setVisibilityFlags, wasClicked

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ec

public EnvelopeCalculation ec

isSurface

public boolean isSurface

SURFACE_DISTANCE_FOR_CALCULATION

static final float SURFACE_DISTANCE_FOR_CALCULATION

See Also:

Constant Field Values

bsOn

java.util.BitSet bsOn

bsSelected

private java.util.BitSet bsSelected

bsIgnore

private java.util.BitSet bsIgnore

MAX_LEVEL

static int MAX_LEVEL

thisAtom

int thisAtom

thisRadius

float thisRadius

thisArgb

int thisArgb

rdLast

RadiusData rdLast

Constructor Detail

Dots

public Dots()

Method Detail

initShape

public void initShape()

Overrides:

initShape in class Shape

getSize

public int getSize(int atomIndex)

Overrides:

getSize in class AtomShape

Returns:

size

setProperty

public void setProperty(java.lang.String propertyName,
               java.lang.Object value,
               java.util.BitSet bs)

Description copied from class: Shape

may come from any source -- executed AFTER a shape's own setProperty method

Overrides:

setProperty in class AtomShape

initialize

void initialize()

setSize

protected void setSize(RadiusData rd,
           java.util.BitSet bsSelected)

Overrides:

setSize in class AtomShape

setModelClickability

public void setModelClickability()

Overrides:

setModelClickability in class AtomShape

getShapeState

public java.lang.String getShapeState()

Overrides:

getShapeState in class AtomShape