org.jmol.shape

Class Measures

java.lang.Object

org.jmol.shape.Shape

org.jmol.shape.Measures

All Implemented Interfaces:

JmolMeasurementClient

public class Measures
extends Shape
implements JmolMeasurementClient

Field Summary

Fields

Modifier and Type	Field and Description
private Atom[]	atoms
private java.util.BitSet	bsColixSet
private java.util.BitSet	bsSelected
(package private) short	colix
(package private) TickInfo	defaultTickInfo
(package private) Font3D	font3d
private java.lang.Boolean	intramolecular
(package private) short	mad
(package private) int	measurementCount
(package private) MeasurementPending	measurementPending
(package private) java.util.List<Measurement>	measurements
private boolean	mustBeConnected
private boolean	mustNotBeConnected
private RadiusData	radiusData
private java.lang.String	strFormat
(package private) TickInfo	tickInfo
private int	tokAction

Fields inherited from class org.jmol.shape.Shape

g3d, isBioShape, modelSet, myVisibilityFlag, RADIUS_MAX, shapeID, translucentAllowed, translucentLevel, viewer, xmlProperties

Constructor Summary

Constructors

Constructor and Description
Measures()

Method Summary

Methods

Modifier and Type	Method and Description
private void	clear()
private void	define(int iPt, Measurement m, boolean isDelete, boolean isShow, boolean doSelect)
private void	define(MeasurementData md, int tokAction)
private void	defineMeasurement(int i, Measurement m, boolean doSelect)
private void	delete(Measurement m)
private void	delete(java.lang.Object value)
private void	deleteMeasurement(int i)
private int	find(Measurement m)
private java.util.List<java.util.Map<java.lang.String,java.lang.Object>>	getAllInfo()
private java.lang.String	getAllInfoAsString()
private java.util.Map<java.lang.String,java.lang.Object>	getInfo(int index)
private java.lang.String	getInfoAsString(int index)
java.lang.Object	getProperty(java.lang.String property, int index)
java.lang.String	getShapeState()
private java.lang.String	getState(int index)
protected void	initModelSet()
void	initShape()
private void	pending(MeasurementPending measurementPending)
void	processNextMeasure(Measurement m)
private void	reformatDistances()
private void	setColor(short colix)
private void	setFormats(java.lang.String format)
private void	setIndices()
void	setProperty(java.lang.String propertyName, java.lang.Object value, java.util.BitSet bsIgnored) may come from any source -- executed AFTER a shape's own setProperty method
private Measurement	setSingleItem(java.util.List<java.lang.Object> vector)
protected void	setSize(int size, java.util.BitSet bsSelected)
(package private) void	setVisibilityInfo()
private void	showHide(boolean isHide)
private void	showHide(Measurement m, boolean isHide)
private void	toggle(Measurement m)
private void	toggleOn(int[] indices)

Methods inherited from class org.jmol.shape.Shape

appendCmd, checkBoundsMinMax, checkObjectClicked, checkObjectDragged, checkObjectHovered, coordinateInRange, encodeColor, findNearestAtomIndex, getColix, getColorCommand, getColorCommand, getFontCommand, getIndexFromName, getProperty, getShapeCommands, getShapeCommands, getShapeDetail, getSize, getSize, getTranslucentLabel, getViewer, initializeShape, merge, setColix, setColix, setColix, setModelClickability, setModelSet, setShapeProperty, setShapeSize, setSize, setStateInfo, setStateInfo, setVisibilityFlags, wasClicked

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

bsColixSet

private java.util.BitSet bsColixSet

bsSelected

private java.util.BitSet bsSelected

strFormat

private java.lang.String strFormat

mustBeConnected

private boolean mustBeConnected

mustNotBeConnected

private boolean mustNotBeConnected

radiusData

private RadiusData radiusData

intramolecular

private java.lang.Boolean intramolecular

atoms

private Atom[] atoms

measurementCount

int measurementCount

measurements

final java.util.List<Measurement> measurements

measurementPending

MeasurementPending measurementPending

mad

short mad

colix

short colix

font3d

Font3D font3d

tickInfo

TickInfo tickInfo

defaultTickInfo

TickInfo defaultTickInfo

tokAction

private int tokAction

Constructor Detail

Measures

public Measures()

Method Detail

initModelSet

protected void initModelSet()

Overrides:

initModelSet in class Shape

initShape

public void initShape()

Overrides:

initShape in class Shape

setSize

protected void setSize(int size,
           java.util.BitSet bsSelected)

Overrides:

setSize in class Shape

setProperty

public void setProperty(java.lang.String propertyName,
               java.lang.Object value,
               java.util.BitSet bsIgnored)

Description copied from class: Shape

may come from any source -- executed AFTER a shape's own setProperty method

Overrides:

setProperty in class Shape

setSingleItem

private Measurement setSingleItem(java.util.List<java.lang.Object> vector)

getProperty

public java.lang.Object getProperty(java.lang.String property,
                           int index)

Overrides:

getProperty in class Shape

Returns:

true if serviced

clear

private void clear()

setColor

private void setColor(short colix)

setFormats

private void setFormats(java.lang.String format)

showHide

private void showHide(boolean isHide)

showHide

private void showHide(Measurement m,
            boolean isHide)

toggle

private void toggle(Measurement m)

toggleOn

private void toggleOn(int[] indices)

delete

private void delete(Measurement m)

delete

private void delete(java.lang.Object value)

define

private void define(int iPt,
          Measurement m,
          boolean isDelete,
          boolean isShow,
          boolean doSelect)

find

private int find(Measurement m)

setIndices

private void setIndices()

define

private void define(MeasurementData md,
          int tokAction)

processNextMeasure

public void processNextMeasure(Measurement m)

Specified by:

processNextMeasure in interface JmolMeasurementClient

defineMeasurement

private void defineMeasurement(int i,
                     Measurement m,
                     boolean doSelect)

deleteMeasurement

private void deleteMeasurement(int i)

pending

private void pending(MeasurementPending measurementPending)

reformatDistances

private void reformatDistances()

getAllInfo

private java.util.List<java.util.Map<java.lang.String,java.lang.Object>> getAllInfo()

getAllInfoAsString

private java.lang.String getAllInfoAsString()

getInfo

private java.util.Map<java.lang.String,java.lang.Object> getInfo(int index)

getInfoAsString

private java.lang.String getInfoAsString(int index)

setVisibilityInfo

void setVisibilityInfo()

getShapeState

public java.lang.String getShapeState()

Overrides:

getShapeState in class Shape

getState

private java.lang.String getState(int index)