BCF2FieldWriter.GenotypesWriter (htsjdk 4.3.0 API)

java.lang.Object

htsjdk.variant.variantcontext.writer.BCF2FieldWriter

htsjdk.variant.variantcontext.writer.BCF2FieldWriter.GenotypesWriter

Direct Known Subclasses:: BCF2FieldWriter.GTWriter, BCF2FieldWriter.IGFGenotypesWriter, BCF2FieldWriter.IntegerTypeGenotypesWriter, BCF2FieldWriter.StaticallyTypeGenotypesWriter

Enclosing class:: BCF2FieldWriter

public abstract static class BCF2FieldWriter.GenotypesWriter extends BCF2FieldWriter

Nested Class Summary

Nested classes/interfaces inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter
BCF2FieldWriter.FTGenotypesWriter, BCF2FieldWriter.GenericSiteWriter, BCF2FieldWriter.GenotypesWriter, BCF2FieldWriter.GTWriter, BCF2FieldWriter.IGFGenotypesWriter, BCF2FieldWriter.IntegerTypeGenotypesWriter, BCF2FieldWriter.SiteWriter, BCF2FieldWriter.StaticallyTypeGenotypesWriter
Constructor Summary

Constructors

Modifier

Constructor

Description

protected

GenotypesWriter(VCFHeader header, BCF2FieldEncoder fieldEncoder)
Method Summary

Modifier and Type

Method

Description

void

addGenotype(BCF2Encoder encoder, VariantContext vc, Genotype g)

protected int

numElements(VariantContext vc, Genotype g)

void

start(BCF2Encoder encoder, VariantContext vc)

Methods inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter
done, getField, getFieldEncoder, getHeader, toString

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details
- GenotypesWriter
  
  protected GenotypesWriter(VCFHeader header, BCF2FieldEncoder fieldEncoder)
Method Details
- start
  
  public void start(BCF2Encoder encoder, VariantContext vc) throws IOException
  
  Overrides:
  
  start in class BCF2FieldWriter
  
  Throws:
  
  IOException
- addGenotype
  
  public void addGenotype(BCF2Encoder encoder, VariantContext vc, Genotype g) throws IOException
  
  Throws:
  
  IOException
- numElements
  
  protected int numElements(VariantContext vc, Genotype g)