htsjdk.tribble.index.TribbleIndexCreator

Direct Known Subclasses:: DynamicIndexCreator, IntervalIndexCreator, LinearIndexCreator

public abstract class TribbleIndexCreator extends Object implements IndexCreator

Base class for Tribble-specific index creators.

Field Details
- properties
  
  protected LinkedHashMap<String,String> properties
Constructor Details
- TribbleIndexCreator
  
  public TribbleIndexCreator()
Method Details
- addProperty
  
  public void addProperty(String key, String value)
- setIndexSequenceDictionary
  
  public void setIndexSequenceDictionary(SAMSequenceDictionary dict)
  
  Set the sequence dictionary entries for the index property list.
  
  Specified by:
  
  setIndexSequenceDictionary in interface IndexCreator
  
  Parameters:
  
  dict - the dictionary to add to the index.

Class TribbleIndexCreator

Field Summary