Package htsjdk.samtools.seekablestream

Class SeekableStreamFactory

java.lang.Object
htsjdk.samtools.seekablestream.SeekableStreamFactory
public class SeekableStreamFactory extends Object
Singleton class for getting SeekableStreams from URL/paths Applications using this library can set their own factory

  • Field Details

  • Method Details

    • setInstance

      public static void setInstance(ISeekableStreamFactory factory)

    • getInstance

      public static ISeekableStreamFactory getInstance()

    • isFilePath

      @Deprecated public static boolean isFilePath(String path)
      Deprecated.
      this method is simplistic and no longer particularly useful since IOPath allows similar access to various non-file data sources, internal use has been replaced with isBeingHandledByLegacyUrlSupport(String)
      Does this path point to a regular file on disk and not something like a URL?
      Parameters:
      path - the path to test
      Returns:
      true if the path is to a file on disk

    • isBeingHandledByLegacyUrlSupport

      public static boolean isBeingHandledByLegacyUrlSupport(String path)
      is this path being handled by one of the legacy SeekableStream types (http(s) / ftp)
      Parameters:
      path - a path to check
      Returns:
      if the path is not being handled by a FileSystemProvider and it can be read by legacy streams

    • canBeHandledByLegacyUrlSupport

      public static boolean canBeHandledByLegacyUrlSupport(String path)