Package htsjdk.samtools.cram.encoding.external

Class ExternalLongEncoding

java.lang.Object
htsjdk.samtools.cram.encoding.CRAMEncoding<Long>
htsjdk.samtools.cram.encoding.external.ExternalEncoding<Long>
htsjdk.samtools.cram.encoding.external.ExternalLongEncoding
public final class ExternalLongEncoding extends ExternalEncoding<Long>

  • Constructor Details

    • ExternalLongEncoding

      public ExternalLongEncoding(int externalBlockContentId)

  • Method Details

    • fromSerializedEncodingParams

      public static ExternalLongEncoding fromSerializedEncodingParams(byte[] serializedParams)
      Create a new instance of this encoding using the (ITF8 encoded) serializedParams.
      Parameters:
      serializedParams -
      Returns:
      ExternalLongEncoding with parameters populated from serializedParams

    • buildCodec

      public CRAMCodec<Long> buildCodec(SliceBlocksReadStreams sliceBlocksReadStreams, SliceBlocksWriteStreams sliceBlocksWriteStreams)
      Description copied from class: CRAMEncoding
      Instantiate the codec represented by this encoding by supplying it with the appropriate streams
      Specified by:
      buildCodec in class CRAMEncoding<Long>
      Parameters:
      sliceBlocksReadStreams - the core block bit stream a CoreCodec will read from
      sliceBlocksWriteStreams - the core block bit stream a CoreCodec will write to
      Returns:
      a newly instantiated codec