Package htsjdk.samtools.cram.encoding.external

Class ExternalEncoding<T>

java.lang.Object
htsjdk.samtools.cram.encoding.CRAMEncoding<T>
htsjdk.samtools.cram.encoding.external.ExternalEncoding<T>
Direct Known Subclasses:
ExternalByteArrayEncoding, ExternalByteEncoding, ExternalIntegerEncoding, ExternalLongEncoding
public abstract class ExternalEncoding<T> extends CRAMEncoding<T>

  • Field Details

    • externalBlockContentId

      protected final int externalBlockContentId

  • Constructor Details

    • ExternalEncoding

      protected ExternalEncoding(int externalBlockContentId)

  • Method Details

    • toSerializedEncodingParams

      public byte[] toSerializedEncodingParams()
      Description copied from class: CRAMEncoding
      Serialize encoding parameters to an ITF8-encoded byte array. By convention, each subclass should have a corresponding and symmetric "fromSerializedEncodingParams" that returns a new instance of that encoding populated with values from the serialized encoding params.
      Specified by:
      toSerializedEncodingParams in class CRAMEncoding<T>
      Returns:
      a byte array containing the encoding's parameter values encoded as an ITF8 stream.

    • toString

      public String toString()
      Overrides:
      toString in class Object