htsjdk.samtools.cram.compression.rans.RANSEncode<RANSNx16Params>

htsjdk.samtools.cram.compression.rans.ransnx16.RANSNx16Encode

public class RANSNx16Encode extends RANSEncode<RANSNx16Params>

Encoder for the CRAM 3.1 rANSNx16 codec with 16-bit state renormalization (as opposed to the rAns4x8 codec, which uses 8-bit state renormalization), and order-0 or order-1 context. Also supports bit-packing and run length encoding. Does not support striping for write (see the spec). This codec is also used internally by the read name NameTokenisation codec.

Constructor Summary

Constructors

Constructor

Description

RANSNx16Encode()
Method Summary

Modifier and Type

Method

Description

ByteBuffer

compress(ByteBuffer inBuffer, RANSNx16Params ransNx16Params)

Methods inherited from class htsjdk.samtools.cram.compression.rans.RANSEncode
buildSymsOrder0, buildSymsOrder1, getEncodingSymbols, initializeRANSEncoder

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- RANSNx16Encode
  
  public RANSNx16Encode()
Method Details
- compress
  
  public ByteBuffer compress(ByteBuffer inBuffer, RANSNx16Params ransNx16Params)
  
  Specified by:
  
  compress in class RANSEncode<RANSNx16Params>

Class RANSNx16Encode

Constructor Summary

Method Summary

Methods inherited from class htsjdk.samtools.cram.compression.rans.RANSEncode

Methods inherited from class java.lang.Object

Constructor Details

RANSNx16Encode

Method Details

compress