htsjdk.samtools.cram.compression.rans.RANSDecode

htsjdk.samtools.cram.compression.rans.ransnx16.RANSNx16Decode

public class RANSNx16Decode extends RANSDecode

Decoder for the CRAM 3.1 rANSNx16 codec with 16-bit state renormalization (as opposed to the rAns4x8 codec, which uses 8-bit state renormalization), and order-0 or order-1 context. Also supports bit-packing, run length encoding and striping (see the spec). This codec is also used internally by the read name NameTokenisation codec.

Constructor Summary

Constructors

Constructor

Description

RANSNx16Decode()
Method Summary

Modifier and Type

Method

Description

ByteBuffer

uncompress(ByteBuffer inBuffer)

Methods inherited from class htsjdk.samtools.cram.compression.rans.RANSDecode
getD, getDecodingSymbols, initializeRANSDecoder

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- RANSNx16Decode
  
  public RANSNx16Decode()
Method Details
- uncompress
  
  public ByteBuffer uncompress(ByteBuffer inBuffer)
  
  Specified by:
  
  uncompress in class RANSDecode

Class RANSNx16Decode

Constructor Summary

Method Summary

Methods inherited from class htsjdk.samtools.cram.compression.rans.RANSDecode

Methods inherited from class java.lang.Object

Constructor Details

RANSNx16Decode

Method Details

uncompress