Utils (htsjdk 4.3.0 API)

java.lang.Object

htsjdk.samtools.cram.compression.rans.Utils

public final class Utils extends Object

Constructor Summary

Constructors

Constructor

Description

Utils()
Method Summary

Modifier and Type

Method

Description

static void

normaliseFrequenciesOrder0(int[] F, int bits)

static void

normaliseFrequenciesOrder0Shift(int[] frequencies, int bits)

static void

normaliseFrequenciesOrder1(int[][] F, int shift)

static void

normaliseFrequenciesOrder1Shift(int[][] F, int shift)

static long

RANSDecodeRenormalize4x8(long r, ByteBuffer byteBuffer)

static long

RANSDecodeRenormalizeNx16(long r, ByteBuffer byteBuffer)

static int

RANSGetCumulativeFrequency(long r, int scaleBits)

static void

reverse(ByteBuffer byteBuffer)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- Utils
  
  public Utils()
Method Details
- reverse
  
  public static void reverse(ByteBuffer byteBuffer)
- RANSGetCumulativeFrequency
  
  public static int RANSGetCumulativeFrequency(long r, int scaleBits)
- RANSDecodeRenormalize4x8
  
  public static long RANSDecodeRenormalize4x8(long r, ByteBuffer byteBuffer)
- RANSDecodeRenormalizeNx16
  
  public static long RANSDecodeRenormalizeNx16(long r, ByteBuffer byteBuffer)
- normaliseFrequenciesOrder0
  
  public static void normaliseFrequenciesOrder0(int[] F, int bits)
- normaliseFrequenciesOrder1
  
  public static void normaliseFrequenciesOrder1(int[][] F, int shift)
- normaliseFrequenciesOrder0Shift
  
  public static void normaliseFrequenciesOrder0Shift(int[] frequencies, int bits)
- normaliseFrequenciesOrder1Shift
  
  public static void normaliseFrequenciesOrder1Shift(int[][] F, int shift)