Class RangeExternalCompressor
java.lang.Object
htsjdk.samtools.cram.compression.ExternalCompressor
htsjdk.samtools.cram.compression.range.RangeExternalCompressor
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Field Summary
Fields inherited from class htsjdk.samtools.cram.compression.ExternalCompressor
NO_COMPRESSION_ARG -
Constructor Summary
ConstructorsConstructorDescriptionRangeExternalCompressor(int formatFlags, RangeEncode rangeEncode, RangeDecode rangeDecode) RangeExternalCompressor(RangeEncode rangeEncode, RangeDecode rangeDecode) -
Method Summary
Modifier and TypeMethodDescriptionbyte[]compress(byte[] data, CRAMCodecModelContext unused_contextModel) Compress the data using the codec-specific context model.toString()byte[]uncompress(byte[] data) Methods inherited from class htsjdk.samtools.cram.compression.ExternalCompressor
equals, getCompressorForMethod, getMethod, hashCode
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Constructor Details
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RangeExternalCompressor
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RangeExternalCompressor
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Method Details
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compress
Description copied from class:ExternalCompressorCompress the data using the codec-specific context model.- Specified by:
compressin classExternalCompressor- Parameters:
data- the data to compressunused_contextModel- the context model to use for compression; may be null- Returns:
- the compressed data
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uncompress
public byte[] uncompress(byte[] data) - Specified by:
uncompressin classExternalCompressor
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toString
- Overrides:
toStringin classExternalCompressor
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