htsjdk.samtools.cram.compression.nametokenisation.NameTokeniserExternalCompressor

public class NameTokeniserExternalCompressor extends ExternalCompressor

Field Summary

Fields inherited from class htsjdk.samtools.cram.compression.ExternalCompressor
NO_COMPRESSION_ARG
Constructor Summary

Constructors

Constructor

Description

NameTokeniserExternalCompressor(NameTokenisationEncode nameTokEncoder, NameTokenisationDecode nameTokDecoder)
Method Summary

Modifier and Type

Method

Description

byte[]

compress(byte[] data, CRAMCodecModelContext unused_contextModel)

Compress the data using the codec-specific context model.

byte[]

uncompress(byte[] data)

Methods inherited from class htsjdk.samtools.cram.compression.ExternalCompressor
equals, getCompressorForMethod, getMethod, hashCode, toString

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details
- NameTokeniserExternalCompressor
  
  public NameTokeniserExternalCompressor(NameTokenisationEncode nameTokEncoder, NameTokenisationDecode nameTokDecoder)
Method Details
- compress
  
  public byte[] compress(byte[] data, CRAMCodecModelContext unused_contextModel)
  
  Description copied from class: ExternalCompressor
  
  Compress the data using the codec-specific context model.
  
  Specified by:
  
  compress in class ExternalCompressor
  
  Parameters:
  
  data - the data to compress
  
  unused_contextModel - the context model to use for compression; may be null
  
  Returns:
  
  the compressed data
- uncompress
  
  public byte[] uncompress(byte[] data)
  
  Specified by:
  
  uncompress in class ExternalCompressor

Class NameTokeniserExternalCompressor

Field Summary