Class FQZState
java.lang.Object
htsjdk.samtools.cram.compression.fqzcomp.FQZState
-
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionintgetBases()intintgetDelta()booleanintintint[]intintboolean[]intintvoidsetBases(int bases) voidsetContext(int context) voidsetDelta(int delta) voidsetIsDuplicate(boolean isDuplicate) voidsetPreviousQuality(int previousQuality) voidsetQualityContext(int qualityContext) voidsetReadOrdinal(int readOrdinal) voidsetRecordLength(int recordLength) voidsetSelector(int selector) voidsetSelectorTable(int selectorTable)
-
Constructor Details
-
FQZState
public FQZState()
-
-
Method Details
-
getContext
public int getContext() -
setContext
public void setContext(int context) -
getQualityContext
public int getQualityContext() -
setQualityContext
public void setQualityContext(int qualityContext) -
getPreviousQuality
public int getPreviousQuality() -
setPreviousQuality
public void setPreviousQuality(int previousQuality) -
getDelta
public int getDelta() -
setDelta
public void setDelta(int delta) -
getBases
public int getBases() -
setBases
public void setBases(int bases) -
getSelector
public int getSelector() -
setSelector
public void setSelector(int selector) -
getSelectorTable
public int getSelectorTable() -
setSelectorTable
public void setSelectorTable(int selectorTable) -
getRecordLength
public int getRecordLength() -
setRecordLength
public void setRecordLength(int recordLength) -
getIsDuplicate
public boolean getIsDuplicate() -
setIsDuplicate
public void setIsDuplicate(boolean isDuplicate) -
getReadOrdinal
public int getReadOrdinal() -
setReadOrdinal
public void setReadOrdinal(int readOrdinal) -
getQualityLengthArray
public int[] getQualityLengthArray() -
getReverseArray
public boolean[] getReverseArray()
-