java.lang.Object
htsjdk.samtools.cram.compression.fqzcomp.FQZState

public class FQZState extends Object
  • Constructor Details

    • FQZState

      public FQZState()
  • Method Details

    • getContext

      public int getContext()
    • setContext

      public void setContext(int context)
    • getQualityContext

      public int getQualityContext()
    • setQualityContext

      public void setQualityContext(int qualityContext)
    • getPreviousQuality

      public int getPreviousQuality()
    • setPreviousQuality

      public void setPreviousQuality(int previousQuality)
    • getDelta

      public int getDelta()
    • setDelta

      public void setDelta(int delta)
    • getBases

      public int getBases()
    • setBases

      public void setBases(int bases)
    • getSelector

      public int getSelector()
    • setSelector

      public void setSelector(int selector)
    • getSelectorTable

      public int getSelectorTable()
    • setSelectorTable

      public void setSelectorTable(int selectorTable)
    • getRecordLength

      public int getRecordLength()
    • setRecordLength

      public void setRecordLength(int recordLength)
    • getIsDuplicate

      public boolean getIsDuplicate()
    • setIsDuplicate

      public void setIsDuplicate(boolean isDuplicate)
    • getReadOrdinal

      public int getReadOrdinal()
    • setReadOrdinal

      public void setReadOrdinal(int readOrdinal)
    • getQualityLengthArray

      public int[] getQualityLengthArray()
    • getReverseArray

      public boolean[] getReverseArray()