Package htsjdk.samtools

Class BAMQueryMultipleIntervalsIteratorFilter

java.lang.Object
htsjdk.samtools.BAMQueryMultipleIntervalsIteratorFilter
public class BAMQueryMultipleIntervalsIteratorFilter extends Object
Filters out records that do not match any of the given intervals and query type.

  • Constructor Details

    • BAMQueryMultipleIntervalsIteratorFilter

      public BAMQueryMultipleIntervalsIteratorFilter(QueryInterval[] intervals, boolean contained)

  • Method Details

    • compareToFilter

      public htsjdk.samtools.BAMIteratorFilter.FilteringIteratorState compareToFilter(SAMRecord record)

    • compareIntervalToRecord

      public static htsjdk.samtools.BAMIteratorFilter.IntervalComparison compareIntervalToRecord(QueryInterval interval, SAMRecord record)