htsjdk.beta.plugin.variants (htsjdk 4.3.0 API)

package htsjdk.beta.plugin.variants

Related Packages

Package

Description

htsjdk.beta.plugin

htsjdk.beta.plugin.hapref

htsjdk.beta.plugin.interval

htsjdk.beta.plugin.reads

htsjdk.beta.plugin.registry
Class

Description

VariantsBundle

A Bundle for variants and variants-related resources that are backed by on disk files.

VariantsCodec

Base class for all HtsContentType.VARIANT_CONTEXTS codecs.

VariantsDecoder

Base class for all HtsContentType.VARIANT_CONTEXTS decoders.

VariantsDecoderOptions

VariantsEncoder

Base class for all HtsContentType.VARIANT_CONTEXTS encoders.

VariantsEncoderOptions

VariantsFormats

Class with string constants representing known formats supported by variants codecs.