VariantsDecoder (htsjdk 4.3.0 API)

All Superinterfaces:: AutoCloseable, Closeable, HtsDecoder<VCFHeader,VariantContext>, HtsQuery<VariantContext>, Iterable<VariantContext>

All Known Implementing Classes:: VCFDecoder, VCFDecoderV3_2, VCFDecoderV3_3, VCFDecoderV4_0, VCFDecoderV4_1, VCFDecoderV4_2, VCFDecoderV4_3

public interface VariantsDecoder extends HtsDecoder<VCFHeader,VariantContext>

Base class for all HtsContentType.VARIANT_CONTEXTS decoders.

Method Summary

Methods inherited from interface htsjdk.beta.plugin.HtsDecoder
close, getDisplayName, getFileFormat, getHeader, getVersion

Methods inherited from interface htsjdk.beta.plugin.interval.HtsQuery
hasIndex, isQueryable, iterator, query, query, query, query, queryContained, queryContained, queryContained, queryOverlapping, queryOverlapping, queryOverlapping, queryStart

Methods inherited from interface java.lang.Iterable
forEach, spliterator