Package htsjdk.beta.plugin

Interface Upgradeable

All Known Subinterfaces:
HaploidReferenceCodec, HtsCodec<D,E>, ReadsCodec, VariantsCodec
All Known Implementing Classes:
BAMCodec, BAMCodecV1_0, CRAMCodec, CRAMCodecV2_1, CRAMCodecV3_0, CRAMCodecV3_1, FASTACodecV1_0, HtsgetBAMCodec, HtsgetBAMCodecV1_2, SAMCodec, SAMCodecV1_0, VCFCodec, VCFCodecV3_2, VCFCodecV3_3, VCFCodecV4_0, VCFCodecV4_1, VCFCodecV4_2, VCFCodecV4_3
public interface Upgradeable
Placeholder interface for methods for upgrading one version of a format to a newer version.

  • Method Summary

    Modifier and Type
    Method
    Description
    boolean
    runVersionUpgrade(HtsVersion sourceCodecVersion, HtsVersion targetCodecVersion)
     

  • Method Details

    • runVersionUpgrade

      boolean runVersionUpgrade(HtsVersion sourceCodecVersion, HtsVersion targetCodecVersion)