htsjdk.beta.io.bundle (htsjdk 4.3.0 API)

package htsjdk.beta.io.bundle

Related Packages

Package

Description

htsjdk.beta.io
Class

Description

Bundle

An immutable collection of related resources, including a (single, required) primary resource, such as "reads", "variants", "features", or "reference", plus zero or more related secondary resources ("index", "dictionary", "MD5", etc.).

BundleBuilder

A builder class for Bundles.

BundleJSON

Methods for serializing and deserializing Bundles to and from JSON strings.

BundleResource

Interface defined for bundle resource objects that may be included in a Bundle.

BundleResourceBase

Base class for BundleResource implementations.

BundleResourceType

Constants for specifying standard content types and formats for resources contained in a Bundle.

InputStreamResource

A BundleResource backed by an InputStream.

IOPathResource

A BundleResource backed by an IOPath.

OutputStreamResource

A BundleResource backed by an OutputStream.

SeekableStreamResource

A BundleResource backed by a SeekableStream.

SignatureStream

An input stream over the first signaturePrefixLength bytes of another input stream, used to allow multiple codecs to probe those bytes for a file format/version signature.