MutableFeature (htsjdk 2.24.1 API)

java.lang.Object
- htsjdk.tribble.MutableFeature

All Implemented Interfaces:

Locatable, Feature
```
public class MutableFeature
extends Object
implements Feature
```
A mutable concrete Feature.

Field Summary

Fields
Modifier and Type Field Description

String contig

int end

int start

Constructor Summary

Constructors
Constructor Description

MutableFeature(Feature feature)

MutableFeature(String contig, int start, int end)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`String`	`getContig()`	Gets the contig name for the contig this is mapped to.
`int`	`getEnd()`
`int`	`getStart()`
`void`	`setAll(Feature feature)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface htsjdk.tribble.Feature
getChr

Methods inherited from interface htsjdk.samtools.util.Locatable
contains, contigsMatch, getLengthOnReference, overlaps, withinDistanceOf

- Field Detail
  - contig
```
public String contig
```
  - start
```
public int start
```
  - end
```
public int end
```
- Constructor Detail
  - MutableFeature
```
public MutableFeature(Feature feature)
```
  - MutableFeature
```
public MutableFeature(String contig,
                      int start,
                      int end)
```
- Method Detail
  - setAll
```
public void setAll(Feature feature)
```
  - getContig
```
public String getContig()
```
    Description copied from interface: Locatable
    
    Gets the contig name for the contig this is mapped to. May return null if there is no unique mapping.
    
    Specified by:
    
    getContig in interface Locatable
    
    Returns:
    
    name of the contig this is mapped to, potentially null
  - getStart
```
public int getStart()
```
    Specified by:
    
    getStart in interface Locatable
    
    Returns:
    
    1-based start position, undefined if getContig() == null
  - getEnd
```
public int getEnd()
```
    Specified by:
    
    getEnd in interface Locatable
    
    Returns:
    
    1-based closed-ended position, undefined if getContig() == null