ExternalByteEncoding (htsjdk 2.24.1 API)

java.lang.Object
- htsjdk.samtools.cram.encoding.CRAMEncoding<T>
- - htsjdk.samtools.cram.encoding.external.ExternalEncoding<Byte>
  - - htsjdk.samtools.cram.encoding.external.ExternalByteEncoding

public final class ExternalByteEncoding
extends ExternalEncoding<Byte>

Field Summary
- Fields inherited from class htsjdk.samtools.cram.encoding.external.ExternalEncoding
  externalBlockContentId

Constructor Summary

Constructors
Constructor Description

ExternalByteEncoding(int externalBlockContentId)

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`CRAMCodec<Byte>`	`buildCodec(SliceBlocksReadStreams sliceBlocksReadStreams, SliceBlocksWriteStreams sliceBlocksWriteStreams)`	Instantiate the codec represented by this encoding by supplying it with the appropriate streams
`static ExternalByteEncoding`	`fromSerializedEncodingParams(byte[] serializedParams)`	Create a new instance of this encoding using the (ITF8 encoded) serializedParams.

Methods inherited from class htsjdk.samtools.cram.encoding.external.ExternalEncoding
toSerializedEncodingParams, toString

Methods inherited from class htsjdk.samtools.cram.encoding.CRAMEncoding
buildReadCodec, buildWriteCodec, id, toEncodingDescriptor

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - ExternalByteEncoding
```
public ExternalByteEncoding(int externalBlockContentId)
```
- Method Detail
  - fromSerializedEncodingParams
```
public static ExternalByteEncoding fromSerializedEncodingParams(byte[] serializedParams)
```
    Create a new instance of this encoding using the (ITF8 encoded) serializedParams.
    
    Parameters:
    
    serializedParams -
    
    Returns:
    
    ExternalByteEncoding with parameters populated from serializedParams
  - buildCodec
```
public CRAMCodec<Byte> buildCodec(SliceBlocksReadStreams sliceBlocksReadStreams,
                                  SliceBlocksWriteStreams sliceBlocksWriteStreams)
```
    Description copied from class: CRAMEncoding
    
    Instantiate the codec represented by this encoding by supplying it with the appropriate streams
    
    Specified by:
    
    buildCodec in class CRAMEncoding<Byte>
    
    Parameters:
    
    sliceBlocksReadStreams - the core block bit stream a CoreCodec will read from
    
    sliceBlocksWriteStreams - the core block bit stream a CoreCodec will write to
    
    Returns:
    
    a newly instantiated codec