CramSpanContainerIterator (htsjdk 2.24.1 API)

java.lang.Object
- htsjdk.samtools.cram.build.CramContainerIterator
- - htsjdk.samtools.cram.build.CramSpanContainerIterator

All Implemented Interfaces:

Closeable, AutoCloseable, Iterator<Container>
```
public final class CramSpanContainerIterator
extends CramContainerIterator
```
An iterator of CRAM containers read from locations in a SeekableStream. The locations are specified with pairs of coordinates, and are basically file pointers as returned for example by SamReader.Indexing.getFilePointerSpanningReads()

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`static CramSpanContainerIterator`	`fromFileSpan(SeekableStream seekableStream, long[] coordinates)`
`boolean`	`hasNext()`
`Container`	`next()`
`void`	`remove()`

Methods inherited from class htsjdk.samtools.cram.build.CramContainerIterator
close, containerFromStream, getCramHeader, getSamFileHeader

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Iterator
forEachRemaining

- Method Detail
  - fromFileSpan
```
public static CramSpanContainerIterator fromFileSpan(SeekableStream seekableStream,
                                                     long[] coordinates)
```
  - hasNext
```
public boolean hasNext()
```
    Specified by:
    
    hasNext in interface Iterator<Container>
    
    Overrides:
    
    hasNext in class CramContainerIterator
  - next
```
public Container next()
```
    Specified by:
    
    next in interface Iterator<Container>
    
    Overrides:
    
    next in class CramContainerIterator
  - remove
```
public void remove()
```
    Specified by:
    
    remove in interface Iterator<Container>
    
    Overrides:
    
    remove in class CramContainerIterator