htsjdk.variant.vcf (htsjdk 2.18.2 API)

Interface Summary
Interface	Description
VCFIDHeaderLine	an interface for ID-based header lines
VCFIterator	An iterator of `VariantContext`.

Class Summary
Class	Description
AbstractVCFCodec
VCF3Codec	A feature codec for the VCF3 specification, to read older VCF files.
VCFCodec	A feature codec for the VCF 4 specification
VCFCompoundHeaderLine	a base class for compound header lines, which include info lines and format lines (so far)
VCFConstants
VCFContigHeaderLine	A special class representing a contig VCF header line.
VCFEncoder	Functions specific to encoding VCF records.
VCFFileReader	Simplified interface for reading from VCF/BCF files.
VCFFilterHeaderLine
VCFFormatHeaderLine
VCFHeader	A class to represent a VCF header
VCFHeaderLine
VCFHeaderLineTranslator	A class for translating between vcf header versions
VCFInfoHeaderLine
VCFIteratorBuilder	A Class building `VCFIterator` Example:
VCFRecordCodec	Writes VariantContext instances to an OutputStream without headers or metadata.
VCFSimpleHeaderLine
VCFStandardHeaderLines	Manages header lines for standard VCF
VCFUtils

Enum Summary
Enum	Description
VCFCompoundHeaderLine.SupportedHeaderLineType
VCFHeader.HEADER_FIELDS
VCFHeaderLineCount	the count encodings we use for fields in VCF header lines
VCFHeaderLineType	the type encodings we use for fields in VCF header lines
VCFHeaderVersion	information that identifies each header version

Package htsjdk.variant.vcf