java.lang.Object
- htsjdk.samtools.cram.structure.ReadTag

All Implemented Interfaces:

Comparable<ReadTag>
```
public class ReadTag
extends Object
implements Comparable<ReadTag>
```
CRAM counterpart of SAMTag. TODO: consider merging/dropping this class in favour of SAMTag or a SAMTag implementation.

Field Summary

Fields
Modifier and Type Field Description

String keyType3Bytes

int keyType3BytesAsInt

Constructor Summary

Constructors
Constructor Description

ReadTag(int id, byte[] dataAsByteArray, ValidationStringency validationStringency)

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`int`	`compareTo(ReadTag o)`
`SAMRecord.SAMTagAndValue`	`createSAMTag()`
`static ReadTag`	`deriveTypeFromKeyAndType(String keyAndType, Object value)`
`static ReadTag`	`deriveTypeFromValue(String key, Object value)`
`boolean`	`equals(Object o)`
`byte`	`getIndex()`
`String`	`getKey()`
`String`	`getKeyAndType()`
`Object`	`getValue()`
`byte[]`	`getValueAsByteArray()`
`int`	`hashCode()`
`static String`	`intToNameType3Bytes(int value)`
`static String`	`intToNameType4Bytes(int value)`
`static int`	`name3BytesToInt(byte[] name)`
`static int`	`nameType3BytesToInt(String name, char type)`
`static Object`	`readSingleValue(byte tagType, ByteBuffer byteBuffer, ValidationStringency validationStringency)`
`void`	`setIndex(byte i)`
`static byte[]`	`writeSingleValue(byte tagType, Object value, boolean isUnsignedArray)`

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Field Detail

keyType3Bytes
```
public String keyType3Bytes
```

keyType3BytesAsInt
```
public int keyType3BytesAsInt
```

Constructor Detail

ReadTag

public ReadTag(int id,
               byte[] dataAsByteArray,
               ValidationStringency validationStringency)

Method Detail

name3BytesToInt

public static int name3BytesToInt(byte[] name)

nameType3BytesToInt

public static int nameType3BytesToInt(String name,
                                      char type)

intToNameType3Bytes

public static String intToNameType3Bytes(int value)

intToNameType4Bytes

public static String intToNameType4Bytes(int value)

createSAMTag

public SAMRecord.SAMTagAndValue createSAMTag()

deriveTypeFromKeyAndType

public static ReadTag deriveTypeFromKeyAndType(String keyAndType,
                                               Object value)

deriveTypeFromValue

public static ReadTag deriveTypeFromValue(String key,
                                          Object value)

getKey
```
public String getKey()
```

compareTo
```
public int compareTo(ReadTag o)
```
Specified by:

compareTo in interface Comparable<ReadTag>

getValue
```
public Object getValue()
```

getKeyAndType
```
public String getKeyAndType()
```

getValueAsByteArray
```
public byte[] getValueAsByteArray()
```

setIndex
```
public void setIndex(byte i)
```

getIndex
```
public byte getIndex()
```

writeSingleValue

public static byte[] writeSingleValue(byte tagType,
                                      Object value,
                                      boolean isUnsignedArray)

readSingleValue

public static Object readSingleValue(byte tagType,
                                     ByteBuffer byteBuffer,
                                     ValidationStringency validationStringency)

equals
```
public boolean equals(Object o)
```
Overrides:

equals in class Object

hashCode
```
public int hashCode()
```
Overrides:

hashCode in class Object

Class ReadTag

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

keyType3Bytes

keyType3BytesAsInt

Constructor Detail

ReadTag

Method Detail

name3BytesToInt

nameType3BytesToInt

intToNameType3Bytes

intToNameType4Bytes

createSAMTag

deriveTypeFromKeyAndType

deriveTypeFromValue

getKey

compareTo

getValue

getKeyAndType

getValueAsByteArray

setIndex

getIndex

writeSingleValue

readSingleValue

equals

hashCode