CramRecordWriter (htsjdk 2.18.2 API)

java.lang.Object
- htsjdk.samtools.cram.encoding.writer.CramRecordWriter

public class CramRecordWriter
extends Object

Constructor Summary

Constructors
Constructor	Description
`CramRecordWriter(BitOutputStream coreOutputStream, Map<Integer,ByteArrayOutputStream> externalOutputMap, CompressionHeader header, int refId)`	Initializes a Cram Record Writer

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`writeCramCompressionRecords(List<CramCompressionRecord> records, int prevAlignmentStart)`	Writes a series of Cram Compression Records, using this class's Encodings

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - CramRecordWriter
```
public CramRecordWriter(BitOutputStream coreOutputStream,
                        Map<Integer,ByteArrayOutputStream> externalOutputMap,
                        CompressionHeader header,
                        int refId)
```
    Initializes a Cram Record Writer
    
    Parameters:
    
    coreOutputStream - Core data block bit stream, to be written by non-external Encodings
    
    externalOutputMap - External data block byte stream map, to be written by external Encodings
    
    header - the associated Cram Compression Header
    
    refId - the reference sequence ID to assign to these records
- Method Detail
  - writeCramCompressionRecords
```
public void writeCramCompressionRecords(List<CramCompressionRecord> records,
                                        int prevAlignmentStart)
```
    Writes a series of Cram Compression Records, using this class's Encodings
    
    Parameters:
    
    records - the Cram Compression Records to write
    
    prevAlignmentStart - the alignmentStart of the previous record, for delta calculation