java.lang.Object
- htsjdk.samtools.cram.encoding.CRAMEncoding<Integer>
- - htsjdk.samtools.cram.encoding.core.CanonicalHuffmanIntegerEncoding

public class CanonicalHuffmanIntegerEncoding
extends CRAMEncoding<Integer>

Constructor Summary

Constructors
Constructor Description

CanonicalHuffmanIntegerEncoding(int[] values, int[] bitLengths)

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`CRAMCodec<Integer>`	`buildCodec(BitInputStream coreBlockInputStream, BitOutputStream coreBlockOutputStream, Map<Integer,ByteArrayInputStream> externalBlockInputMap, Map<Integer,ByteArrayOutputStream> externalBlockOutputMap)`	Instantiate the codec represented by this encoding by supplying it with the appropriate streams
`boolean`	`equals(Object o)`
`static CanonicalHuffmanIntegerEncoding`	`fromParams(byte[] data)`
`int`	`hashCode()`
`byte[]`	`toByteArray()`	Subclasses but have a defined serialization of their parameters

Methods inherited from class htsjdk.samtools.cram.encoding.CRAMEncoding
buildReadCodec, buildWriteCodec, id, toParam

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - CanonicalHuffmanIntegerEncoding
```
public CanonicalHuffmanIntegerEncoding(int[] values,
                                       int[] bitLengths)
```
- Method Detail
  - fromParams
```
public static CanonicalHuffmanIntegerEncoding fromParams(byte[] data)
```
  - toByteArray
```
public byte[] toByteArray()
```
    Description copied from class: CRAMEncoding
    
    Subclasses but have a defined serialization of their parameters
    
    Specified by:
    
    toByteArray in class CRAMEncoding<Integer>
    
    Returns:
    
    a byte array representing a specific encoding's parameter values
  - buildCodec
```
public CRAMCodec<Integer> buildCodec(BitInputStream coreBlockInputStream,
                                     BitOutputStream coreBlockOutputStream,
                                     Map<Integer,ByteArrayInputStream> externalBlockInputMap,
                                     Map<Integer,ByteArrayOutputStream> externalBlockOutputMap)
```
    Description copied from class: CRAMEncoding
    
    Instantiate the codec represented by this encoding by supplying it with the appropriate streams
    
    Specified by:
    
    buildCodec in class CRAMEncoding<Integer>
    
    Parameters:
    
    coreBlockInputStream - the core block bit stream a CoreCodec will read from
    
    coreBlockOutputStream - the core block bit stream a CoreCodec will write to
    
    externalBlockInputMap - the external block byte stream a ExternalCodec will read from
    
    externalBlockOutputMap - the external block byte stream a ExternalCodec will write to
    
    Returns:
    
    a newly instantiated codec
  - equals
```
public boolean equals(Object o)
```
    Overrides:
    
    equals in class Object
  - hashCode
```
public int hashCode()
```
    Overrides:
    
    hashCode in class Object

Class CanonicalHuffmanIntegerEncoding

Constructor Summary

Method Summary

Methods inherited from class htsjdk.samtools.cram.encoding.CRAMEncoding

Methods inherited from class java.lang.Object

Constructor Detail

CanonicalHuffmanIntegerEncoding

Method Detail

fromParams

toByteArray

buildCodec

equals

hashCode