SAMFileSource (htsjdk 2.18.2 API)

java.lang.Object
- htsjdk.samtools.SAMFileSource

public class SAMFileSource
extends Object

Represents the origin of a SAM record.

Constructor Summary

Constructors
Constructor Description

SAMFileSource(SamReader reader, SAMFileSpan filePointer)
Create a new SAMFileSource with the given reader and file pointer.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`SAMFileSpan`	`getFilePointer()`	A pointer to the region on disk from which the read originated.
`SamReader`	`getReader()`	Retrieves the reader from which this read was initially retrieved.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - SAMFileSource
```
public SAMFileSource(SamReader reader,
                     SAMFileSpan filePointer)
```
    Create a new SAMFileSource with the given reader and file pointer.
    
    Parameters:
    
    reader - reader.
    
    filePointer - File pointer.
- Method Detail
  - getReader
```
public SamReader getReader()
```
    Retrieves the reader from which this read was initially retrieved.
    
    Returns:
    
    The reader.
  - getFilePointer
```
public SAMFileSpan getFilePointer()
```
    A pointer to the region on disk from which the read originated.
    
    Returns:
    
    A pointer within the file.